Variant Annotation Integrator
 
Select Genome Assembly and Region
clade genome assembly
region to annotate

Select Variants
If you have more than one custom track or hub track in pgSnp or VCF format, please select the one you wish to annotate:
variants:
maximum number of variants to be processed:
   To reset all user cart settings (including custom tracks), click here.

Select Genes
The gene predictions selected here will be used to determine the effect of each variant on genes, for example intronic, missense, splice site, intergenic etc.


Define Filters
+  Functional role

Configure Output
output format:
output file:   (leave blank to keep output in browser)
file type returned:  plain text   gzip compressed (ignored if output file is blank)
This tool is for research use only. While this tool is open to the public, users seeking information about a personal medical or genetic condition are urged to consult with a qualified physician for diagnosis and for answers to personal questions.




Using the Variant Annotation Integrator
 
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